Center for the Physics of Living Cells (CPLC) :: Department of Physics at the University of Illinois

Center for the Physics of Living Cells (CPLC) :: Department of Physics at the University of Illinois

A bacterial treadmill

A bacterial treadmill

 Many bacteria, such as E. coli, propel themselves in water using rotating helical tails called flagella.  They sense chemicals in their surroundings and alter their swimming behavior in order to move toward favorable environments (and away from unfavorable ones). This phenomenon is referred to as chemotaxis. Bacterial chemotaxis serves as a model for the way all living cells capture and process signals from their environment, and modulate their behavior based on those signals.

The laboratories of Professors Yann Chemla and Ido Golding in the Department of Physics at the University of Illinois, Urbana-Champaign have recently developed a new method to study this process (Nature Methods 6 (11):831-835, 2009).  Using optical “tweezers”, or focused laser light, they immobilized individual E. coli cells in water without impeding their swimming motion.  In essence, this generated a “bacterial treadmill” in which a cell swims but remains in place.  This technique allowed the team to follow bacterial swimming over long durations and with a resolution hitherto unachievable. The figure above is an artist's rendering of a bacterium held in the light of the optical tweezers (depicted by the red cones).  

 For more information see: http://news.illinois.edu/news/09/1005bacteria.html 

 

SiMPull: Single Molecule Pull-Down

SiMPull: Single Molecule Pull-Down

Cellular processes result from coordinated interactions between protein molecules. A detailed analysis of these interactions is central to understanding cell function and regulation. Traditionally, protein–protein interactions have been studied using a technique called ‘pull-down assay’, where, the target protein or 'bait' is captured from the cell or tissue extracts. When the bait protein is isolated, the proteins interacting with it, or the 'prey', are co-captured. These protein complexes are purified and subsequently analyzed using western blot or mass spectrometry. Using this analysis, however, it is often difficult to resolve complexity and functional role of the protein assemblies. Now, researchers at Taekjip Ha’s group have developed a novel technique, single molecule pull-down or SiMPull, for studying protein interactions at a single molecule resolution (Nature, 473, 484-488 (2011)). SiMPull combines conventional pull-down assay with single molecule imaging: protein complexes are pulled-down directly from fresh cultured cell or tissue extracts on to microscope slides and imaged under a single molecule fluorescence microscope. Once the complexes are immobilized on microscope slides, one can perform single molecule biochemistry to yield additional information about their composition and function. Additionally, the assay is very sensitive, “We can now use a single cell as opposed to 5000 cells for a regular western blot,” says Ha. “And this can be done in 20 minutes.”  Link to publication: http://www.nature.com/nature/journal/v473/n7348/full/nature10016.html